516 lines
24 KiB
HTML
516 lines
24 KiB
HTML
<h1 id="awesome-health-awesome">Awesome Health <a
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href="https://github.com/sindresorhus/awesome"><img
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src="https://cdn.jsdelivr.net/gh/sindresorhus/awesome@d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg"
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alt="Awesome" /></a></h1>
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<p>Curated list of awesome open source healthcare software, libraries,
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tools and resources. Each link has been vetted to ensure the project is
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active and provides value to healthcare facilities, providers,
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developers, policy experts, and/or research scientists.</p>
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<h2 id="contents">Contents</h2>
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<ul>
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<li><a href="#ehr">EHR</a></li>
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<li><a href="#specifications">Specifications</a></li>
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<li><a href="#prescribing">Prescribing</a></li>
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<li><a href="#nursing">Nursing</a></li>
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<li><a href="#imaging">Imaging</a></li>
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<li><a href="#dental">Dental</a></li>
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<li><a href="#laboratory">Laboratory</a></li>
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<li><a href="#libraries">Libraries</a></li>
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<li><a href="#frameworks">Frameworks</a></li>
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<li><a href="#applications">Applications</a></li>
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<li><a href="#phr">Personal Health Record</a></li>
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<li><a href="#telemedicine">Telemedicine</a></li>
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<li><a href="#integration">Integration</a></li>
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<li><a href="#research">Research</a></li>
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<li><a href="#hardware">Hardware</a></li>
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<li><a href="#bioinformatics">Bioinformatics</a></li>
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<li><a href="#books">Books</a></li>
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<li><a href="#data">Data</a></li>
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<li><a href="#datasets">Datasets</a></li>
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<li><a href="#design">Design</a></li>
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<li><a href="#empi">Enterprise Master Patient Index</a></li>
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<li><a href="#machine-learning">Machine Learning</a></li>
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<li><a href="#compliance">Compliance</a></li>
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<li><a href="#asset-management">Asset Management</a></li>
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<li><a href="#logistics">Logistics</a></li>
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<li><a href="#analytics">Analytics</a></li>
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</ul>
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<h3 id="ehr">EHR</h3>
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<ul>
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<li><a href="https://akello.io">Akello</a> - Integrated Mental Health
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Infrastructure</li>
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<li><a href="https://www.bahmni.org">Bahmni</a> - Electronic Medical
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Record and hospital system.</li>
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<li><a href="https://cottagemed.org/p/26/Download-Cottage-Med">Cottage
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Med</a> - Electronic Medical Record software designed by
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physicians.</li>
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<li><a href="https://www.gnuhealth.org">GNU Health</a> - Electronic
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Medical Record, Hospital Management, and Health Information System.</li>
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<li><a href="https://www.gnumed.de/documentation/">GNUmed</a> -
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Electronic Medical Record software.</li>
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<li><a href="https://ehrbase.org">EHRBase</a> OpenEHR Clinical Data
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Repository.</li>
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<li><a href="https://github.com/ppazos/cabolabs-ehrserver">EHRServer</a>
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- CaboLabs EHRServer.</li>
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<li><a href="https://github.com/frappe/erpnext">ERPNext</a> - Modules
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that help manage patients, appointments, consultations, lab tests, and
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billing.</li>
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<li><a href="https://freemedforms.com/fr/start">FreeMedForms EMR</a> -
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Electronic Medical Record software.</li>
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<li><a href="https://hospitalrun.io">HospitalRun</a> - Helps provide the
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most modern Hospital Information System possible to the least resourced
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environments.</li>
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<li><a href="https://hosxp.net/wordpress/">HOSxP</a> - Thai Hospital
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Information System that aims to ease the healthcare workflow of health
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centers and central hospitals.</li>
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<li><a href="https://librehealth.io/projects/lh-ehr/">LibreHealth
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EHR</a> - Clinically-focused Electronic Health Record System.</li>
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<li><a href="https://medintux.org/">MedinTux</a> - French Medical
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Practice Management System.</li>
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<li><a href="https://github.com/medplum/medplum">Medplum</a> - Developer
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platform that enables flexible and rapid development of healthcare
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apps.</li>
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<li><a href="https://github.com/OCA/vertical-medical">Odoo Medical</a> -
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Universal Health and Hospital Information System.</li>
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<li><a href="https://github.com/jact/openclinic">OpenClinic</a> -
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Medical Records System.</li>
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<li><a href="https://www.open-emr.org">OpenEMR</a> - Electronic Health
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Records and Medical Practice Management application.</li>
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<li><a href="https://openeyes.apperta.org">OpenEyes</a> - Electronic
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Medical Record application for ophthalmology.</li>
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<li><a href="https://sourceforge.net/projects/openhospital/">Open
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Hospital</a> - Electronic Medical Record software for underprivileged
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rural hospitals.</li>
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<li><a href="https://github.com/IMS-MAXIMS/openMAXIMS">openMAXIMS</a> -
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Full Patient Administration System designed for the NHS.</li>
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<li><a href="https://openmrs.org">OpenMRS</a> - Enterprise Electronic
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Medical Record System platform.</li>
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<li><a href="https://bitbucket.org/oscaremr/oscar">OSCAR EMR</a> - OSCAR
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McMaster Project.</li>
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<li><a href="https://www.ozone-his.com">Ozone HIS</a> - The
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entreprise-grade integrated health information system built with OpenMRS
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3</li>
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<li><a href="https://www.ripple.foundation">Ripple</a> - NHS-funded,
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community led initiative working towards an integrated Digital Care
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Record Platform.</li>
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</ul>
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<h3 id="specifications">Specifications</h3>
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<ul>
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<li><a
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href="https://www.hl7.org/implement/standards/product_brief.cfm?product_id=7">Continuity
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of Care Document</a> - Continuity of Care Document specifications</li>
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<li><a href="https://dicom.innolitics.com/ciods">DICOM Standards
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Browser</a> - Provides an effective way to learn the DICOM standard and
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inspect DICOM attributes.</li>
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<li><a href="https://www.hl7.org/fhir/">FHIR</a> - Fast Health
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Interoperability Resources.</li>
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<li><a
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href="https://www.hl7.org/implement/standards/product_brief.cfm?product_id=185">HL7
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Version 2</a> - Specifications for all versions of HL7v2</li>
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<li><a href="https://www.ohdsi.org/data-standardization/">OHDSI OMOP
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Common Data Model</a> - Standardized data model for many healthcare
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concepts, awesome Github presence including scripts for many major
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relational databases.</li>
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<li><a href="https://www.openehr.org">OpenEHR</a> - Open specification
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upon which software can be built.</li>
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<li><a href="https://www.openmhealth.org">Open mHealth</a> - Open
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Standard For Mobile Health Data.</li>
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<li><a href="https://docs.smarthealthit.org/">SMART on FHIR</a> - Open
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standards based technology platform.</li>
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</ul>
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<h3 id="prescribing">Prescribing</h3>
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<ul>
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<li><a
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href="https://github.com/ehrscape/examples/tree/master/openep">OpenEP</a>
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- Suite of medicines management apps that improve the safety and
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efficiency of prescribing and medicines management.</li>
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</ul>
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<h3 id="nursing">Nursing</h3>
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<ul>
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<li><a href="https://openeobs.github.io/">open-eObs</a> - Observation
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and clinical assessment platform that offers a real-time view of all
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patients across a ward.</li>
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</ul>
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<h3 id="imaging">Imaging</h3>
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<ul>
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<li><a href="https://www.slicer.org">3D Slicer</a> - Cross-platform
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application for analyzing, visualizing and understanding medical image
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data.</li>
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<li><a
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href="https://github.com/cornerstonejs/cornerstone">Cornerstone</a> -
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Open source project with a goal to deliver a complete web based medical
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imaging platform.</li>
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<li><a href="https://www.dcm4che.org/">dcm4che</a> - Clinical Image and
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Object Management.</li>
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<li><a href="https://github.com/bioinformatics-ua/dicoogle">Dicoogle</a>
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- Dicoogle is an extensible, platform-independent and open-source
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PACS</li>
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<li><a href="https://github.com/nci/drishti/wiki">Drishti</a> -
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Tomography and electron-microscopy data visualizer for both scientists
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and lay people.</li>
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<li><a href="https://github.com/DICOMcloud/DICOMcloud">DICOMcloud</a> -
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A standalone DICOMweb server with RESTful implementation of the
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DICOMweb/WADO services.</li>
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<li><a href="https://github.com/microsoft/dicom-server">DICOM Server</a>
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- OSS Implementation of DICOMweb standard.</li>
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<li><a href="https://ivmartel.github.io/dwv/">DICOM Web Viewer</a> -
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JavaScript/HTML5-based DICOM viewer with standard tools and a focus on
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supporting various screen sizes.</li>
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<li><a href="https://imagej.net/software/fiji/">Fiji</a> - Open-source
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platform for biological-image analysis.</li>
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<li><a href="https://horosproject.org">Horos</a> - Medical image
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viewer.</li>
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<li><a href="https://invesalius.github.io">InVesalius</a> - Open source
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software for reconstruction of computed tomography and magnetic
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ressonance images.</li>
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<li><a href="https://itk.org/">ITK</a> - Toolkit used for the
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development of image segmentation and image registration programs with
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leading-edge algorithms in 2 and 3 dimensions.</li>
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<li><a href="http://www.itksnap.org/pmwiki/pmwiki.php">ITK-SNAP</a> -
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Interactive software for 3 dimensional image navigation, annotation, and
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automatic segmentation with an emphasis on user-friendliness.</li>
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<li><a href="https://librehealth.io/projects/lh-radiology/">LibreHealth
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Radiology</a> - Customized version of LibreHealth Toolkit with
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additional tools for radiology and imaging professionals.</li>
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<li><a href="https://github.com/kaapana/kaapana">Kaapana</a> - Open
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source toolkit for state of the art platform provisioning in the field
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of medical data analysis.</li>
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<li><a href="https://kheops.online">Kheops</a> - Open source platform
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for sharing medical images</li>
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<li><a href="https://github.com/OHIF/Viewers">OHIF</a> - OHIF
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zero-footprint DICOM viewer and oncology specific Lesion Tracker.</li>
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<li><a href="https://github.com/ome/openmicroscopy">Omero</a> - open
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source client/server system written in Java for visualizing, managing,
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and annotating microscope images and metadata</li>
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<li><a href="https://openrem.org/">OpenREM</a> - Radiation Exposure
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Monitoring for physicists.</li>
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<li><a href="https://github.com/openslide/openslide">OpenSlide</a> - is
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a C library for reading whole slide image files.</li>
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<li><a href="https://www.orthanc-server.com">Orthanc</a> - Lightweight
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DICOM server for healthcare and medical research.</li>
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<li><a href="https://github.com/rii-mango/Papaya">Papaya</a> - Pure
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JavaScript medical research image viewer.</li>
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<li><a href="https://github.com/ImagingDataCommons/slim">Slim</a> -
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Interoperable web viewer and annotation tool for computational
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pathology.</li>
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<li><a href="https://github.com/hms-dbmi/viv">Viv</a> - multiscale
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visualization of high-resolution multiplexed bioimaging data on the
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web.</li>
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<li><a href="https://vtk.org">VTK</a> - 3 dimensional visualization
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toolkit supporting a variety of algorithms and modeling techniques.</li>
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</ul>
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<h3 id="dental">Dental</h3>
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<ul>
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<li><a href="https://www.opendental.com">Open Dental</a> - Dental
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Practice Management Software.</li>
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<li><a href="https://openmolar.com/">OpenMolar</a> - Dental Practice
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Management Software.</li>
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</ul>
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<h3 id="laboratory">Laboratory</h3>
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<ul>
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<li><a href="https://openelis-global.org">OpenELIS</a> - Laboratory
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Information System for Global Health.</li>
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<li><a href="https://www.senaite.com">SENAITE</a> - Laboratory
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Information Management System.</li>
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</ul>
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<h3 id="frameworks">Frameworks</h3>
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<ul>
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<li><a href="https://github.com/smart-on-fhir/api-server">API Server</a>
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- FHIR Server to support patient- and clinician-facing apps.</li>
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<li><a href="https://github.com/samply/blaze">Blaze</a> - A FHIR Store
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with internal, fast CQL Evaluation Engine</li>
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<li><a href="https://github.com/carekit-apple/CareKit/">CareKit</a> -
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Open source software framework for creating apps that help people better
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understand and manage their health.</li>
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<li><a href="https://github.com/clinical-meteor">Clinical Meteor
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project</a> - Meteor for FDA, HIPAA, and HL7 compliant
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applications.</li>
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<li><a
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href="https://github.com/cqframework/clinical_quality_language">Clinical
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Quality Language</a> - Clinical Quality Language is a HL7 standard for
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the expression of clinical knowledge.</li>
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<li><a href="https://github.com/VectorInstitute/cyclops">CyclOps</a> -
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Framework for healthcare ML implementation.</li>
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<li><a href="https://fhirbase.github.io">FHIRBase</a> - Storage based on
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the FHIR Standard.</li>
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<li><a href="https://github.com/microsoft/fhir-proxy">FHIR Proxy</a> -
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secure application that acts as an intermediary in the transfer of FHIR
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data to and from Azure API.</li>
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<li><a
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href="https://github.com/awslabs/fhir-works-on-aws-deployment">FHIR
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Works on AWS</a> - FHIR Works on AWS deployment.</li>
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<li><a href="https://github.com/Microsoft/fhir-server">FHIR Server for
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Azure</a> - A .NET Core implementation of the FHIR standard.</li>
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<li><a href="https://inferno-framework.github.io">Inferno</a> -
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providing testing tools for the FHIR</li>
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<li><a href="https://github.com/intervention-engine/fhir">Intervention
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Engine FHIR Server</a> - Generic FHIR server implementation in
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GoLang.</li>
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<li><a href="https://github.com/LinuxForHealth/FHIR">LinuxForHealth FHIR
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Server</a> - Modular Java implementation of version 4 of the HL7 FHIR
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specification.</li>
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<li><a href="https://github.com/medblocks/medblocks-ui">Medblocks UI</a>
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- Web Components for rapid development of openEHR and FHIR systems.</li>
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<li><a href="https://opal.openhealthcare.org.uk/">Opal</a> - Framework
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for building clinical applications.</li>
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<li><a href="https://github.com/ResearchKit/ResearchKit">ResearchKit</a>
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- Software framework that makes it easy to create apps for medical
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research or for other research projects.</li>
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<li><a href="https://github.com/FirelyTeam/spark">Spark</a> - Public
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domain FHIR server developed in C#.</li>
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<li><a href="https://github.com/FHIR/sushi">Sushi</a> - a reference
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implementation command-line interpreter/compiler for FHIR</li>
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<li><a
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href="https://github.com/smart-on-fhir/Swift-SMART">Swift-SMART</a> -
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Swift SMART on FHIR framework for iOS and OS X.</li>
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</ul>
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<h3 id="libraries">Libraries</h3>
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<ul>
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<li><a href="https://github.com/google/android-fhir">Android FHIR
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SDK</a> - The Android FHIR SDK</li>
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<li><a href="https://github.com/openehr/archie">Archie</a> - OpenEHR
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Library written in Java.</li>
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<li><a
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href="https://github.com/bluehalo/node-fhir-server-core">Asymmetrik FHIR
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API Server</a> - A secure REST implementation for the HL7 FHIR
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Specification.</li>
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<li><a href="https://github.com/datamol-io/datamol">Datamol</a> -
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Molecular Manipulation Made Easy. A light Python wrapper build on top of
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RDKit.</li>
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<li><a href="https://dicom.offis.de/dcmtk.php.en">DCMTK</a> - DICOM
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Toolkit.</li>
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<li><a href="https://github.com/suyashkumar/dicom">dicom</a> - High
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Performance DICOM Medical Image Parser in GoLang.</li>
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<li><a href="https://github.com/theislab/ehrapy/">ehrapy</a> -
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Electronic Health Record analysis in Python.</li>
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<li><a href="https://github.com/rexcardan/Evil-DICOM">Evil-DICOM</a> -
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C# DICOM Library.</li>
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<li><a href="https://github.com/fo-dicom/fo-dicom">Fellow Oak DICOM</a>
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- DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono, and
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Unity.</li>
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<li><a href="https://github.com/Vermonster/fhir-kit-client">FHIRKit
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Client</a> - Node FHIR client library.</li>
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<li><a href="https://github.com/apple/FHIRModels">FHIRModels</a> -
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FHIRModels is a Swift library for FHIR resource data models.</li>
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<li><a href="https://github.com/FirelyTeam/firely-net-sdk">FHIR .NET
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API</a> - The official .NET API for HL7 FHIR.</li>
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<li><a href="https://github.com/FHIR/fhir.js">fhir.js</a> - JavaScript
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client for FHIR.</li>
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<li><a href="https://github.com/google/fhir">FHIR protocol buffers</a> -
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A Google implementation of protocol buffers for FHIR.</li>
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<li><a href="https://github.com/microsoft/graphir">Graphir</a> - GraphQL
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interface over FHIR API</li>
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<li><a href="https://github.com/hapifhir/hapi-fhir">HAPI FHIR</a> - Java
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API for HL7 FHIR Clients and Servers.</li>
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<li><a href="https://github.com/jembi/hearth">Hearth</a> - A fast
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FHIR-compliant server focused on longitudinal data stores.</li>
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<li><a
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href="https://github.com/projectcypress/health-data-standards">Health
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data standards</a> - Ruby library for generating and consuming various
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healthcare related formats. These include HITSP C32, QRDA Category I,
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and QRDA Category III.</li>
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<li><a href="https://github.com/wardle/hermes">Hermes</a> - a SNOMED CT
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terminology server.</li>
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<li><a href="https://github.com/metriport/metriport">Metriport</a> -
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Open-source universal API for healthcare data.</li>
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<li><a
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href="https://www.mitk.org/wiki/The_Medical_Imaging_Interaction_Toolkit_(MITK)">MITK</a>
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- The Medical Imaging Interaction Toolkit.</li>
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<li><a href="https://github.com/uk-fci/nhs-number">nhs-numbers</a> -
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Python package to provide utilities for NHS Numbers, including validity
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checks, normalisation, and generation.</li>
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<li><a href="https://github.com/MatthewVita/node-hl7-complete">Node
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HL7</a> - Node module that is bridged with the Java Hapi HL7
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library.</li>
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<li><a
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href="https://github.com/RedoxEngine/redox-hl7-v2">Node-hl7-parser</a> -
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Open source version of Redox’s HL7 v2 to schema-fied JSON parser.</li>
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<li><a href="https://github.com/dcarbone/php-fhir">php-fhir</a> - Tools
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for creating PHP classes from the HL7 FHIR Specification.</li>
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<li><a href="https://github.com/pydicom/pynetdicom">pynetdicom</a> - A
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Python implementation of the DICOM networking protocol.</li>
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<li><a href="https://github.com/johnpaulett/python-hl7">Python HL7</a> -
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Simple library for parsing messages of HL7 version 2.x into Python
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objects.</li>
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<li><a href="https://github.com/smart-on-fhir/client-py">Python SMART on
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FHIR client</a> - Flexible Python client for FHIR servers supporting the
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SMART on FHIR protocol.</li>
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<li><a href="https://github.com/keironstoddart/edi-835-parser">Python
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835 Parser</a> - A simple-to-use Python interface to EDI 835 Health Care
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Claim Payment and Remittance Advice files.</li>
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<li><a href="https://github.com/fhir-crucible/fhir_client">Ruby FHIR</a>
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- FHIR client implementation in Ruby.</li>
|
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<li><a href="https://github.com/segfault/ruby-hl7">Ruby HL7</a> - Ruby
|
||
HL7 library.</li>
|
||
<li><a href="https://github.com/itsbalamurali/rust-fhir">Rust FHIR</a> -
|
||
Rust SDK for HL7 FHIR</li>
|
||
<li><a
|
||
href="https://github.com/mlmed/torchxrayvision">TorchXRayVision</a> - A
|
||
library for chest X-ray datasets and models. Including pre-trained
|
||
models.</li>
|
||
</ul>
|
||
<h3 id="applications">Applications</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/intervention-engine/ie">Intervention
|
||
Engine</a> - Provides a web-application for data-driven team
|
||
huddles.</li>
|
||
<li><a href="https://github.com/smart-on-fhir/growth-chart-app">SMART
|
||
Pediatric Growth Chart</a> - Pediatric growth charts.</li>
|
||
<li><a href="https://github.com/simpledotorg/">Simple</a> - For
|
||
clinicians to track patients with high blood pressure.</li>
|
||
</ul>
|
||
<h3 id="phr">PHR</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/fastenhealth/fasten-onprem">Fasten
|
||
Health</a> - open-source, self-hosted, personal/family electronic
|
||
medical record aggregator</li>
|
||
<li><a href="https://github.com/tidepool-org">Tidepool</a> - Data
|
||
platform to reduce the burden of Type 1 Diabetes.</li>
|
||
<li><a
|
||
href="https://github.com/healthlocker/healthlocker">HealthLocker</a> -
|
||
Elixir-based personal health record.</li>
|
||
</ul>
|
||
<h3 id="telemedicine">Telemedicine</h3>
|
||
<ul>
|
||
<li><a href="https://hcw-at-home.com">Healthcare worker at home</a> -
|
||
Open Source Telehealth software</li>
|
||
</ul>
|
||
<h3 id="research">Research</h3>
|
||
<ul>
|
||
<li><a href="https://www.i2b2.org">i2b2</a> - Research data
|
||
warehouse.</li>
|
||
<li><a
|
||
href="https://www.labkey.com/products-services/labkey-server/">LabKey
|
||
Server</a> - Platform for Translational Research.</li>
|
||
</ul>
|
||
<h3 id="integration">Integration</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/microsoft/FHIR-Converter">FHIR
|
||
Converter</a> - an open source project that enables conversion of health
|
||
data from legacy formats to FHIR.</li>
|
||
<li><a
|
||
href="https://github.com/GoogleCloudPlatform/healthcare-data-harmonization">Google
|
||
HCLS Data Harmonization</a> - an engine that converts data of one
|
||
structure to another</li>
|
||
<li><a href="https://github.com/nextgenhealthcare/connect">NextGen
|
||
Connect Integration Engine</a> - The swiss army knife of healthcare
|
||
integration.</li>
|
||
<li><a href="https://github.com/oehf/ipf">Open eHealth Integration
|
||
Platform</a> - An extension of the Apache Camel routing and mediation
|
||
engine</li>
|
||
<li><a href="http://openhim.org/">OpenHIM</a> - Health information
|
||
mediator.</li>
|
||
<li><a href="https://zato.io/en/industry/healthcare/index.html">Zato</a>
|
||
- A Python-based ESB and integration platform for healthcare
|
||
interoperability, automation and orchestration.</li>
|
||
</ul>
|
||
<h3 id="hardware">Hardware</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/nebulabio/gluco">Gluco</a> -
|
||
Glucometer.</li>
|
||
<li><a
|
||
href="https://hackaday.io/project/9281-murgen-open-source-ultrasound-imaging">Murgen</a>
|
||
- Ultrasound imaging development kit.</li>
|
||
<li><a href="https://openaps.org/">OpenAPS</a> - The Open Artificial
|
||
Pancreas System project is an open and transparent effort to make safe
|
||
and effective basic Artificial Pancreas System.</li>
|
||
</ul>
|
||
<h3 id="bioinformatics">Bioinformatics</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/bigdatagenomics/adam">ADAM</a> -
|
||
Genomics analysis platform.</li>
|
||
<li><a href="https://github.com/bcbio/bcbio-nextgen">Bcbio</a> -
|
||
Validated, scalable, community developed variant calling, RNA-seq and
|
||
small RNA analysis.</li>
|
||
<li><a href="https://galaxyproject.org/">Galaxy</a> - Open web-based
|
||
platform for data intensive biomedical research.</li>
|
||
<li><a href="https://ehubio.ehu.eus/wregex/">Wregex</a> - Amino acid
|
||
motif searching software with optional Position-Specific Scoring
|
||
Matrix.</li>
|
||
</ul>
|
||
<h3 id="books">Books</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/goinvo/EHR">Inspired EHRs</a> - Ideas,
|
||
designs, and techniques for designing an Electronic Health Record
|
||
(EHR).</li>
|
||
</ul>
|
||
<h3 id="data">Data</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/atlas-bi/Library">Atlas BI Library</a>
|
||
The unified report library.</li>
|
||
<li><a href="http://www.caisis.org/">Caisis</a> - Oncology research
|
||
software with a Patient Data Management System.</li>
|
||
<li><a href="https://github.com/mitre/cedar">Cedar</a> - Open source
|
||
tool for testing the strength of Electronic Clinical Quality
|
||
Measure.</li>
|
||
<li><a href="https://ctakes.apache.org/">cTAKES</a> - Natural Language
|
||
Processing System for extraction of information from Electronic Medical
|
||
Record clinical free-text.</li>
|
||
<li><a href="https://github.com/aphp/edsnlp">EDS_NLP</a> - provides a
|
||
set of spaCy components to extract information from clinical notes
|
||
written in French</li>
|
||
<li><a href="https://github.com/aphp/eds-scikit">eds-scikit</a> - a tool
|
||
to assist data scientists working on the AP-HP’s Clinical Data
|
||
Warehouse. It is specifically targeted for OMOP-standardized data.</li>
|
||
<li><a href="https://www.ihris.org/toolkit-new/">IHRIS</a> - Health
|
||
Information System for management of human resources for health.</li>
|
||
<li><a href="https://www.opensafely.org">OpenSAFELY</a> - Secure
|
||
analytics platform for Electronic Health Records in the NHS.</li>
|
||
<li><a href="https://github.com/b2ihealthcare/snow-owl">Snow Owl</a> -
|
||
Highly scalable, open source terminology server with revision-control
|
||
capabilities and collaborative authoring platform features.</li>
|
||
<li><a href="https://github.com/synthetichealth/synthea">Synthea Patient
|
||
Generator</a> - Synthetic patient generator that models the medical
|
||
history of synthetic patients.</li>
|
||
</ul>
|
||
<h3 id="datasets">Datasets</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/beamandrew/medical-data">Medical Data
|
||
for Machine Learning</a> - Curated list of medical data for machine
|
||
learning.</li>
|
||
</ul>
|
||
<h3 id="design">Design</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/goinvo/HealthDeterminants">Determinants
|
||
of Health</a> - Determinants of Health Visualization.</li>
|
||
<li><a href="https://github.com/resolvetosavelives/healthicons">Health
|
||
Icons</a> - A collection of open source icons for public health
|
||
projects.</li>
|
||
</ul>
|
||
<h3 id="empi">EMPI</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/MohawkMEDIC/client-registry">MEDIC
|
||
Client Registry RI</a> - The Mohawk College MARC-HI/MEDIC Client
|
||
Registry EMPI Implementation.</li>
|
||
</ul>
|
||
<h3 id="machine-learning">Machine learning</h3>
|
||
<ul>
|
||
<li><a href="https://healthcare.ai">Healthcare.ai</a> - Python and R
|
||
tools for healthcare machine learning.</li>
|
||
<li><a
|
||
href="https://github.com/shibing624/MedicalGPT/blob/main/README_EN.md">MedicalGPT</a>
|
||
- Training Your Own Medical GPT Model with ChatGPT Training
|
||
Pipeline.</li>
|
||
<li><a href="https://github.com/Project-MONAI/MONAI">MONAI</a> - AI
|
||
Toolkit for Healthcare Imaging.</li>
|
||
<li><a href="https://github.com/sunlabuiuc/PyHealth">PyHealth</a> - A
|
||
Deep Learning Python Toolkit for Healthcare Application.</li>
|
||
</ul>
|
||
<h3 id="asset-management">Asset Management</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/virtalabs/tapirx">Tapirx</a> - Networked
|
||
medical device discovery and identification.</li>
|
||
</ul>
|
||
<h3 id="logistics">Logistics</h3>
|
||
<ul>
|
||
<li><a href="https://github.com/seattleflu/id3c">ID3C</a> - Data
|
||
logistics system enabling real-time genomic epidemiology.</li>
|
||
<li><a href="https://github.com/openboxes/openboxes">OpenBoxes</a> - an
|
||
Open Source Inventory and Supply Chain Management System.</li>
|
||
<li><a href="https://openlmis.org">OpenLMIS</a> - Open source,
|
||
web-based, electronic logistics management information system (LMIS)
|
||
software, purpose-built to manage health commodity supply chains.</li>
|
||
</ul>
|
||
<p><a href="https://github.com/kakoni/awesome-healthcare">healthcare.md
|
||
Github</a></p>
|