Update and add index

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Jonas Zeunert
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#### Democratization of Science
* [Reproducibility](https://www.science.org/doi/full/10.1126/science.1250475) - ***Science***, 2014. [[All Versions](https://scholar.google.com/scholar?cluster=676974831306442279&hl=en&as_sdt=0,10)].
* [Bridging the information gap in organic chemical reactions](https://www.nature.com/articles/s41557-024-01470-8) - ***Nature Chemistry***, 2024. [[All Versions](https://scholar.google.com/scholar?cluster=5365091261196953334)]. This perspective article formulates eight principles to improve data management in scientific publications relating to data standardization, reproducibility and evaluation, and encourage scientists to go beyond current publication standards.
* [A manifesto for reproducible science](https://www.nature.com/articles/s41562-016-0021) - ***Nature Human Behavior***, 2017. [[All Versions](https://scholar.google.com/scholar?cluster=9515807942859203900&hl=en&as_sdt=0,10)].
* [1,500 scientists lift the lid on reproducibility](https://www.nature.com/articles/533452a) - ***Nature***, 2016. [[All Versions](https://scholar.google.com/scholar?cluster=11479406257389837824&hl=en&as_sdt=0,5)].
* [How to Make More Published Research True](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4204808/) - ***PLoS Medicine***, 2014. [[All Versions](https://scholar.google.com/scholar?cluster=10945341175996677908)].
* [Six factors affecting reproducibility in life science research and how to handle them](https://www.nature.com/articles/d42473-019-00004-y) - ***Nature Advertisement***.
* [Five keys to writing a reproducible lab protocol](https://www.nature.com/articles/d41586-021-02428-3) - ***Nature***, 2021. [[All Versions](https://scholar.google.com/scholar?cluster=13259206850261301938)]. This interviewing paper introduces five ways to increase the reproducibility of experimental protocols: (i) documenting protocols as the experiment goes; (ii) providing video illustrations in addition to written protocols; (iii) using electronic lab notebooks (ELNs) for managing experimental resources digitally; (iv) depositing and documenting reagents with understanding the rationale behind every step; and (v) exploiting online platforms to share tips, extensions, methods, and data among researchers.
* [The Experimental Design Assistant](https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2003779) - ***PLoS Biology***, 2017. [[All Versions](https://scholar.google.com/scholar?cluster=12481490526120919925)]. [[Nature Methods Correspondence](https://www.nature.com/articles/nmeth.4462)]. [[EDA Website](https://eda.nc3rs.org.uk/)]. The EDA is a web-based tool that guides the in vivo researcher through the experimental design and analysis process, providing automated feedback on the proposed design and generating a graphical summary that aids communication with colleagues, funders, regulatory authorities, and the wider scientific community.
* [Scientific discovery in the age of artificial intelligence](https://www.nature.com/articles/s41586-023-06221-2) - ***Nature***, 2023. [[All Versions](https://scholar.google.com/scholar?cluster=11962817646389491592&hl=en&as_sdt=0,5)]. A review article that examines breakthroughs over the past decade that include self-supervised learning, which allows models to be trained on vast amounts of unlabelled data, and geometric deep learning, which leverages knowledge about the structure of scientific data to enhance model accuracy and efficiency.
* [Humanmachine collaboration for improving semiconductor process development](https://www.nature.com/articles/s41586-023-05773-7) - ***Nature***, 2023. [[All Versions](https://scholar.google.com/scholar?cluster=10295771969614897767&hl=en&as_sdt=0,5)]. [[Nature News](https://www.nature.com/articles/d41586-023-01353-x)].
@@ -1558,20 +1574,6 @@ organized into intricate patterns that seem to be consistent across individuals.
* [ChemCrow: Augmenting large-language models with chemistry tools](https://openreview.net/forum?id=wdGIL6lx3l) - ***NeurIPS AI for Science Workshop***, 2023. [[All Versions](https://scholar.google.com/scholar?cluster=8711939262720486725&hl=en&as_sdt=0,5)]. [[Preprint](https://arxiv.org/abs/2304.05376)].
* [Reproducibility](https://www.science.org/doi/full/10.1126/science.1250475) - ***Science***, 2014. [[All Versions](https://scholar.google.com/scholar?cluster=676974831306442279&hl=en&as_sdt=0,10)].
* [A manifesto for reproducible science](https://www.nature.com/articles/s41562-016-0021) - ***Nature Human Behavior***, 2017. [[All Versions](https://scholar.google.com/scholar?cluster=9515807942859203900&hl=en&as_sdt=0,10)].
* [1,500 scientists lift the lid on reproducibility](https://www.nature.com/articles/533452a) - ***Nature***, 2016. [[All Versions](https://scholar.google.com/scholar?cluster=11479406257389837824&hl=en&as_sdt=0,5)].
* [How to Make More Published Research True](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4204808/) - ***PLoS Medicine***, 2014. [[All Versions](https://scholar.google.com/scholar?cluster=10945341175996677908)].
* [Six factors affecting reproducibility in life science research and how to handle them](https://www.nature.com/articles/d42473-019-00004-y) - ***Nature Advertisement***.
* [Five keys to writing a reproducible lab protocol](https://www.nature.com/articles/d41586-021-02428-3) - ***Nature***, 2021. [[All Versions](https://scholar.google.com/scholar?cluster=13259206850261301938)]. This interviewing paper introduces five ways to increase the reproducibility of experimental protocols: (i) documenting protocols as the experiment goes; (ii) providing video illustrations in addition to written protocols; (iii) using electronic lab notebooks (ELNs) for managing experimental resources digitally; (iv) depositing and documenting reagents with understanding the rationale behind every step; and (v) exploiting online platforms to share tips, extensions, methods, and data among researchers.
* [The Experimental Design Assistant](https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2003779) - ***PLoS Biology***, 2017. [[All Versions](https://scholar.google.com/scholar?cluster=12481490526120919925)]. [[Nature Methods Correspondence](https://www.nature.com/articles/nmeth.4462)]. [[EDA Website](https://eda.nc3rs.org.uk/)]. The EDA is a web-based tool that guides the in vivo researcher through the experimental design and analysis process, providing automated feedback on the proposed design and generating a graphical summary that aids communication with colleagues, funders, regulatory authorities, and the wider scientific community.
* [Optimizing Spaced Repetition Schedule by Capturing the Dynamics of Memory](https://ieeexplore.ieee.org/abstract/document/10059206) - ***IEEE Transactions on Knowledge and Data Engineering***, 2023. [[All Versions](https://scholar.google.com/scholar?cluster=949715967083833369&hl=en&as_sdt=0,10)].
* [LEGAL-BERT: The Muppets straight out of Law School](https://aclanthology.org/2020.findings-emnlp.261/) - ***EMNLP'20***, 2020. [[All Versions](https://scholar.google.com/scholar?cluster=11254432523766039890&hl=en&as_sdt=0,5)]. Generating answers to legal questions, analyze contracts, and summarizing legal documents, making legal knowledge more accessible to non-experts.
@@ -1612,6 +1614,8 @@ organized into intricate patterns that seem to be consistent across individuals.
* [The Internet of Things comes to the lab](https://www.nature.com/articles/542125a) - ***Nature***, 2017. [[All Versions](https://scholar.google.com/scholar?cluster=7747117198956166976&hl=en&as_sdt=0,5)]. The emergence of connected instruments and equipment promises to untether researchers from the laboratory --- letting them fine-tune experiments and analyse data remotely.
* [Balancing act: when to flex and when to stay fixed](https://www.cell.com/trends/chemistry/fulltext/S2589-5974(23)00249-6) - ***Trends in Chemistry***, 2023. [[All Versions](https://scholar.google.com/scholar?cluster=14208571639305934551)]. This perspective article provides essential insights into the decision-making process for choosing automation platforms, highlighting the suitability of fixed automation for standardized tasks and the strategic use of flexible automation in dynamic research settings.
* [What is a minimal working example for a self-driving laboratory?](https://www.sciencedirect.com/science/article/pii/S2590238522006385) - ***Matter***, 2022. [[All Versions](https://scholar.google.com/scholar?cluster=1612804023616680548)]. This paper proposes SDL-Demo: a low-cost “Hello, World!” for self-driving laboratories that combines “Hello, World!” tasks from electronics, physics-based simulations, and optimization. SDL-Demo is modular and extensible, making it an ideal candidate for low-cost teaching and prototyping of self-driving laboratory concepts.
* [Robotic search for optimal cell culture in regenerative medicine](https://elifesciences.org/articles/77007) - ***eLife***, 2022. [[All Versions](https://scholar.google.com/scholar?cluster=1330075145723138159&hl=en&as_sdt=0,5)].