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Jonas Zeunert
2025-07-18 22:22:32 +02:00
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 Awesome Research Tools
 Awesome Research Tools
!Awesome (https://cdn.rawgit.com/sindresorhus/awesome/d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg) (https://github.com/sindresorhus/awesome)
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Version Control System
▐ First things first, everyone should know version control system, aka VCS. VCS helps us track changes in our documents as well as collaborations on the documents. Needless to say, version control is one of the most useful tools for 
▐ scientists.
▐ First things first, everyone should know version control system, aka VCS. VCS helps us track changes in our documents as well as collaborations on the documents. Needless to say, version control is one of the most useful tools for scientists.
⟡ git
⟡ svn
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⟡ ReadtheDocs (http://readthedocs.org/): Turn your reStructuredText source to HTML, PDF, and epub, all done online.
⟡ GitHub pages (https://pages.github.com/): Integrated with Jekyll and turns markdown posts automatically. Jekyll is a tool for blogging.
⟡ GitHub (http://github.com): Just put markdown, reStructuredText, PDF or IPython/Jupyter notebook files on GitHub. All these formats can be previewed online. The thing to mention is that the math in IPython notebook can be rendered on 
GitHub.
⟡ GitHub (http://github.com): Just put markdown, reStructuredText, PDF or IPython/Jupyter notebook files on GitHub. All these formats can be previewed online. The thing to mention is that the math in IPython notebook can be rendered on GitHub.
⟡ Surge (https://surge.sh/): One command upload your static website to make it live. Surge also integrates GitHub hooks.
⟡ Heroku (https://www.heroku.com/): The one that needs no explanation.
⟡ AWS (https://aws.amazon.com/): Amazon AWS provide student perks.
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⟡ Dillinger (http://dillinger.io/)(Cloud): Markdown editor but no math mode.
⟡ Pandoc Markdown (http://pandoc.herokuapp.com/)(Cloud): Just another Markdown editor with math (MathJax) support.
⟡ Marxico (http://marxi.co/)(Cloud,Mac,Win,Chrome): Markdown editor that integrates with Evernote, generates pdf and works offline. 马克飞象 (https://maxiang.io/)(Cloud,Mac,Win,Chrome) is the Chinese version。
⟡ Madoko (https://www.madoko.net/)(Cloud,Chrome): A Markdown editor with math support, where images are inserted easily with one click, while your files are saved on Dropbox, GitHub, OneDrive or local disk. It generates pdf and HTML 
page and works offline using browser's local storage. One can even import LaTeX files.
⟡ Madoko (https://www.madoko.net/)(Cloud,Chrome): A Markdown editor with math support, where images are inserted easily with one click, while your files are saved on Dropbox, GitHub, OneDrive or local disk. It generates pdf and HTML page and 
works offline using browser's local storage. One can even import LaTeX files.
⟡ Markx (http://markx.herokuapp.com/)(Cloud): Markdown editor for scientific writing. Batteries included.
⟡ typora (https://www.typora.io/)(Mac,Win): Beautiful UI and in-situ live preview.
⟡ Haroopad (http://pad.haroopress.com/)(Mac,Win,Linux): A powerful github flavored markdown editor with useful extensions. Math (mathjax) is supported.
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⟡ Visual Studio Code, aka VS Code (https://code.visualstudio.com/)(Free,Cross-platform,Plugins): same technology as atom but faster than atom, and Microsoft made.
⟡ Atom (https://atom.io/)(Free,Cross-platform,Plugins): electron based editor with numerous plugins and easy modifications. Cross-platform with settings and plugins synchronized through the sync-settings 
(https://atom.io/packages/sync-settings) plugin.
⟡ Atom (https://atom.io/)(Free,Cross-platform,Plugins): electron based editor with numerous plugins and easy modifications. Cross-platform with settings and plugins synchronized through the sync-settings (https://atom.io/packages/sync-settings) 
plugin.
⟡ Sublime Text (https://www.sublimetext.com/)(Free Evaluation,Cross-platform,Plugins): cross-platform, fast, and with plugins. Not free but can be freely used forever.
⟡ JetBrains (https://www.jetbrains.com/)(Free for Students, Cross-platform,Plugins): beautiful IDE's with many debugging and editing modes integrated.
⟡ vim (https://github.com/vim/vim)(Free,Cross-platform,Plugins): no words can describe the almighty vim.
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Investigate Papers
⟡ Synthical (https://synthical.com): AI-powered collaborative research environment. You can use it to get recommendations of articles based on reading history, simplify papers, find out what articles are trending, search articles by 
meaning (not just keywords), create and share folders of articles, see lists of articles from specific companies and universities, and add highlights.
⟡ Synthical (https://synthical.com): AI-powered collaborative research environment. You can use it to get recommendations of articles based on reading history, simplify papers, find out what articles are trending, search articles by meaning (not 
just keywords), create and share folders of articles, see lists of articles from specific companies and universities, and add highlights.
⟡ Paperscape (http://paperscape.org/): Finding interesting papers.
⟡ Peerus (https://peer.us/): Monitor specific topics or journal for new and relevant papers.
⟡ SciRate (https://scirate.com/): An front-end for arXiv with rates from readers.
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Tips for Researchers
⟡ Ten Simple Rules by PLoS One (http://collections.plos.org/ten-simple-rules): Series of quick "Ten Simple Rules" articles for research scientists to manage challenges in their careers. Number of articles are life-science specific, but 
rest the of articles are general enough for any researcher.
⟡ Check the Academic Resources and Grey Literature List (https://github.com/jivoi/awesome-osint#-academic-resources-and-grey-literature) of the Awesome Open-Source Intelligence List (https://github.com/jivoi/awesome-osint) for search 
engines to search for papers.
⟡ Ten Simple Rules by PLoS One (http://collections.plos.org/ten-simple-rules): Series of quick "Ten Simple Rules" articles for research scientists to manage challenges in their careers. Number of articles are life-science specific, but rest the 
of articles are general enough for any researcher.
⟡ Check the Academic Resources and Grey Literature List (https://github.com/jivoi/awesome-osint#-academic-resources-and-grey-literature) of the Awesome Open-Source Intelligence List (https://github.com/jivoi/awesome-osint) for search engines to 
search for papers.
Pacifier
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⟡ Coffitivity (http://coffitivity.com/)(iOS, Android, Web, Mac): a rather simple but useful coffee shop noise library; premium has more three more soundtracks; elegant UI; scientific research powered
⟡ Brain.fm (https://www.brain.fm/)(Web): Improve Focus, Relaxation & Sleep with audio brainwave training. Not free but worth every penny.
⟡ Noizio (http://noiz.io/)(iOS, Mac): a handy white noise tool that stays in your Mac status bar.
⟡ Noisli (http://www.noisli.com/) (iOS, Android, Web, Chrome): free mixing of multiple tracks (which is similar to Soundrown but with much better UI). Users can save a customized setting for later use. I personally think this one has 
better fire sound tracks than soundrown.
⟡ Noisli (http://www.noisli.com/) (iOS, Android, Web, Chrome): free mixing of multiple tracks (which is similar to Soundrown but with much better UI). Users can save a customized setting for later use. I personally think this one has better fire 
sound tracks than soundrown.
⟡ Soundrown (http://soundrown.com/)(Web): free mixing of multiple tracks
⟡ Muji Sleep (http://sleep.muji.net/)(iOS, Android)
⟡ A Soft Murmur (http://asoftmurmur.com/)(Web): free mixing of multiple tracks; simple UI; Timer provided; Meander available
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⟡ MapInSeconds.com (http://www.mapinseconds.com/): Create maps with corresponding data quickly by copy-pasting from a spreadsheet.
⟡ Unpay Wall (http://unpaywall.org/): legally download research papers for free.
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This is a CC BY-SA licensed project. Use the source! Keep the source open!
!CC BY-SA (https://raw.githubusercontent.com/emptymalei/awesome-research/master/assets/cc_bysa.flat.guokr.png)
research Github: https://github.com/emptymalei/awesome-research