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2025-07-18 22:22:32 +02:00
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 Awesome Biological Visualizations !Awesome (https://awesome.re/badge.svg) (https://awesome.re)
 Awesome Biological Visualizations !Awesome (https://awesome.re/badge.svg) (https://awesome.re)
▐ Interactive visualization of biological data on the web.
Web-based biology-related visualization tools are often scattered across the internet and difficult to discover. They may be found on GitHub, Twitter, or linked from scientific papers. These tools can be very useful to scientists 
looking to visualize biological data in the context of diseased or healthy humans or model organisms.
Web-based biology-related visualization tools are often scattered across the internet and difficult to discover. They may be found on GitHub, Twitter, or linked from scientific papers. These tools can be very useful to scientists looking to 
visualize biological data in the context of diseased or healthy humans or model organisms.
Contents
- Cancer (#cancer)
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- Brain mRNA Isoform Atlas (https://isoformatlas.com/) - Visualize cell type signatures of alternative splicing in postnatal development.
- AlzMap (https://alzmap.org/) - Spatial transcriptomics in Alzheimer's disease.
- Loom Viewer 
(http://loom.linnarssonlab.org/dataset/cells/osmFISH/osmFISH_SScortex_mouse_all_cells.loom/NrBEoXQGhYDYoAYLRARigZlRgTDpAtAgFhRnSyg0Wrt1rUVuAHYlCYAOD5AzOo3qNmMAJy8ctaeWAYS0jvNoNqotpO6TSioZgmqmLCTJhNt0ebPCpgAWkQA6RJjgkxYxLkwlMrAKxIjr5wbv7
~iKxcaLj~0AIkULhK~DAscpwZxGZJ_LIgigB2AK4ANqVKHIbquqi10LVKsgIl5RxyybFQPIGYGAi4yey4PGjDArjsaAgYaBOJaDy4A3i0C4G4EgbUEmiJmIwYmMnm2E0QQA) - Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format.
(http://loom.linnarssonlab.org/dataset/cells/osmFISH/osmFISH_SScortex_mouse_all_cells.loom/NrBEoXQGhYDYoAYLRARigZlRgTDpAtAgFhRnSyg0Wrt1rUVuAHYlCYAOD5AzOo3qNmMAJy8ctaeWAYS0jvNoNqotpO6TSioZgmqmLCTJhNt0ebPCpgAWkQA6RJjgkxYxLkwlMrAKxIjr5wbv7~iKxcaLj~0
AIkULhK~DAscpwZxGZJ_LIgigB2AK4ANqVKHIbquqi10LVKsgIl5RxyybFQPIGYGAi4yey4PGjDArjsaAgYaBOJaDy4A3i0C4G4EgbUEmiJmIwYmMnm2E0QQA) - Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format.
- TissUUmaps (https://tissuumaps.research.it.uu.se/) - Interactive visualization of large-scale spatial gene expression and tissue morphology data.
- Giotto Viewer (http://spatialgiotto.rc.fas.harvard.edu/giotto.viewer.html) - A web-based visualization package for spatial transcriptomic data.
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- Avivator (http://avivator.gehlenborglab.org/) - A lightweight "batteries-included" WebGL viewer for remote imaging data in Bio-Formats Zarr or OME-TIFF format.
Connectomics
- neuroglancer (https://hemibrain-dot-neuroglancer-demo.appspot.com/#!gs://neuroglancer-janelia-flyem-hemibrain/v1.0/neuroglancer_demo_states/kc_apl_mpn1.json) - Tool for visualization of highly detailed maps of neuronal connectivity in
the fly brain.
- neuroglancer (https://hemibrain-dot-neuroglancer-demo.appspot.com/#!gs://neuroglancer-janelia-flyem-hemibrain/v1.0/neuroglancer_demo_states/kc_apl_mpn1.json) - Tool for visualization of highly detailed maps of neuronal connectivity in the fly 
brain.
- Allen Mouse Brain Connectivity Atlas (http://connectivity.brain-map.org/) - A high-resolution map of neural connections in the mouse brain.
- FlyWire (https://flywire.ai/) - A human-AI collaboration to map the fly connectome.
@@ -132,3 +132,5 @@
Medicine
- Snake Oil Supplements (http://informationisbeautiful.net/visualizations/snake-oil-scientific-evidence-for-nutritional-supplements-vizsweet/) - Scientific evidence for popular health supplements.
- SieveSifter (http://sieve.fredhutch.org/viz/index.html?study=VTN503&protein=gag&reference=MRK_B_Ad5) - Tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials.
biologicalvisualizations Github: https://github.com/keller-mark/awesome-biological-visualizations