Update render script and Makefile

terminal/biologicalvisualizations

@@ -1,9 +1,9 @@
-                                                          Awesome Biological Visualizations !Awesome (https://awesome.re/badge.svg) (https://awesome.re)
+                                                Awesome Biological Visualizations !Awesome (https://awesome.re/badge.svg) (https://awesome.re)
 
 ▐ Interactive visualization of biological data on the web.
 
-Web-based biology-related visualization tools are often scattered across the internet and difficult to discover. They may be found on GitHub, Twitter, or linked from scientific papers. These tools can be very 
-useful to scientists looking to visualize biological data in the context of diseased or healthy humans or model organisms.
+Web-based biology-related visualization tools are often scattered across the internet and difficult to discover. They may be found on GitHub, Twitter, or linked from scientific papers. These 
+tools can be very useful to scientists looking to visualize biological data in the context of diseased or healthy humans or model organisms.
 
 Contents
 - Cancer (#cancer)
@@ -29,8 +29,8 @@
 - iCoMut Beta for FireBrowse (http://firebrowse.org/iCoMut/) - Interactive exploration of mutation rates, mutation signatures, clinical data, gene mutations.
 - MAGI (http://magi.brown.edu) - Visualization and collaborative annotation of genomic aberrations.
 - ExploSig (http://explosig.lrgr.io) - Interactive visualization of mutational signatures and clinical data.
-- Race, Gender, and Age in TCGA (https://www.enpicom.com/visual-lab/tcga-visual-exploration-gender-race-age/) - An interactive visualization of patient gender, race, and age in The Cancer Genome Atlas (TCGA) 
-dataset.
+- Race, Gender, and Age in TCGA (https://www.enpicom.com/visual-lab/tcga-visual-exploration-gender-race-age/) - An interactive visualization of patient gender, race, and age in The Cancer 
+Genome Atlas (TCGA) dataset.
 - OASISPRO (http://tinyurl.com/oasispro) - Omics analysis tool for clinical phenotype prediction.
 - Signal (https://signal.mutationalsignatures.com/) - Mutational signatures extracted from cancer samples and isogenic cell-based experiments.
 - Oncoscape (https://oncoscape.sttrcancer.org/) - An integrated suite of analysis tools for users to explore hypotheses related to molecular and clinical data.
@@ -62,10 +62,10 @@
 Epigenomics
 - Epiviz (http://epiviz.cbcb.umd.edu/4/) - Interactive visual analytics for functional genomics data.
 - GIVe (https://mcf7.givengine.org/) - Epigenome and genome interaction.
-- WashU Epigenome Browser (http://epigenomegateway.wustl.edu/) - Displays many sequencing-based data sets across all or part of the genome, on specific gene sets or pathways, and in the context of their 
-metadata.
-- Clustergrammer CCLE Explorer (https://maayanlab.github.io/CCLE_Clustergrammer/) - Browse relative mRNA expression data for cancer cell lines from the Cancer Cell Line Encyclopedia (CCLE) by tissue of origin 
-using Clustergrammer.
+- WashU Epigenome Browser (http://epigenomegateway.wustl.edu/) - Displays many sequencing-based data sets across all or part of the genome, on specific gene sets or pathways, and in the 
+context of their metadata.
+- Clustergrammer CCLE Explorer (https://maayanlab.github.io/CCLE_Clustergrammer/) - Browse relative mRNA expression data for cancer cell lines from the Cancer Cell Line Encyclopedia (CCLE) by
+tissue of origin using Clustergrammer.
 - Peax (https://github.com/Novartis/peax) - Interactive visual pattern exploration in epigenomic data using unsupervised deep representation learning.
 
 Proteomics
@@ -80,9 +80,9 @@
 - Brain mRNA Isoform Atlas (https://isoformatlas.com/) - Visualize cell type signatures of alternative splicing in postnatal development.
 - AlzMap (https://alzmap.org/) - Spatial transcriptomics in Alzheimer's disease.
 - Loom Viewer 
-(http://loom.linnarssonlab.org/dataset/cells/osmFISH/osmFISH_SScortex_mouse_all_cells.loom/NrBEoXQGhYDYoAYLRARigZlRgTDpAtAgFhRnSyg0Wrt1rUVuAHYlCYAOD5AzOo3qNmMAJy8ctaeWAYS0jvNoNqotpO6TSioZgmqmLCTJhNt0ebPCpgAWkQA6
-RJjgkxYxLkwlMrAKxIjr5wbv7~iKxcaLj~0AIkULhK~DAscpwZxGZJ_LIgigB2AK4ANqVKHIbquqi10LVKsgIl5RxyybFQPIGYGAi4yey4PGjDArjsaAgYaBOJaDy4A3i0C4G4EgbUEmiJmIwYmMnm2E0QQA) - Tool for sharing, browsing and visualizing 
-single-cell data stored in the Loom file format.
+(http://loom.linnarssonlab.org/dataset/cells/osmFISH/osmFISH_SScortex_mouse_all_cells.loom/NrBEoXQGhYDYoAYLRARigZlRgTDpAtAgFhRnSyg0Wrt1rUVuAHYlCYAOD5AzOo3qNmMAJy8ctaeWAYS0jvNoNqotpO6TSioZgmqm
+LCTJhNt0ebPCpgAWkQA6RJjgkxYxLkwlMrAKxIjr5wbv7~iKxcaLj~0AIkULhK~DAscpwZxGZJ_LIgigB2AK4ANqVKHIbquqi10LVKsgIl5RxyybFQPIGYGAi4yey4PGjDArjsaAgYaBOJaDy4A3i0C4G4EgbUEmiJmIwYmMnm2E0QQA) - Tool for 
+sharing, browsing and visualizing single-cell data stored in the Loom file format.
 - TissUUmaps (https://tissuumaps.research.it.uu.se/) - Interactive visualization of large-scale spatial gene expression and tissue morphology data.
 - Giotto Viewer (http://spatialgiotto.rc.fas.harvard.edu/giotto.viewer.html) - A web-based visualization package for spatial transcriptomic data.
 
@@ -97,7 +97,8 @@
 - Broad Institute Single Cell Portal (https://singlecell.broadinstitute.org/single_cell) - Reducing barriers and accelerating single-cell research.
 - Allen Brain Map - Transcriptomics Explorer (http://celltypes.brain-map.org/rnaseq/human_m1_10x) - Atlas of human and mouse transcriptomic cell types.
 - Single Cell VR (https://singlecellvr.herokuapp.com/) - Interactive visualization of single-cell data in virtual reality.
-- SPRING (https://kleintools.hms.harvard.edu/tools/springViewer_1_6_dev.html?datasets/mouse_HPCs/basal_bone_marrow/full) - A tool for uncovering high-dimensional structure in single-cell gene expression data.
+- SPRING (https://kleintools.hms.harvard.edu/tools/springViewer_1_6_dev.html?datasets/mouse_HPCs/basal_bone_marrow/full) - A tool for uncovering high-dimensional structure in single-cell gene
+expression data.
 - START (https://kcvi.shinyapps.io/START/) -  Shiny Transcriptome Analysis Resource Tool allows users to visualize RNA-seq data starting with count data.
 - iSEE (https://marionilab.cruk.cam.ac.uk/iSEE_allen/) - The Interactive SummarizedExperiment Explorer.
 - TISCH (http://tisch.comp-genomics.org/home/) - Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor microenvironment.
@@ -112,8 +113,8 @@
 - Avivator (http://avivator.gehlenborglab.org/) - A lightweight "batteries-included" WebGL viewer for remote imaging data in Bio-Formats Zarr or OME-TIFF format.
 
 Connectomics
-- neuroglancer (https://hemibrain-dot-neuroglancer-demo.appspot.com/#!gs://neuroglancer-janelia-flyem-hemibrain/v1.0/neuroglancer_demo_states/kc_apl_mpn1.json) - Tool for visualization of highly detailed maps of
-neuronal connectivity in the fly brain.
+- neuroglancer (https://hemibrain-dot-neuroglancer-demo.appspot.com/#!gs://neuroglancer-janelia-flyem-hemibrain/v1.0/neuroglancer_demo_states/kc_apl_mpn1.json) - Tool for visualization of 
+highly detailed maps of neuronal connectivity in the fly brain.
 - Allen Mouse Brain Connectivity Atlas (http://connectivity.brain-map.org/) - A high-resolution map of neural connections in the mouse brain.
 - FlyWire (https://flywire.ai/) - A human-AI collaboration to map the fly connectome.
 
@@ -134,5 +135,6 @@
 
 
 Medicine
-- Snake Oil Supplements (http://informationisbeautiful.net/visualizations/snake-oil-scientific-evidence-for-nutritional-supplements-vizsweet/) - Scientific evidence for popular health supplements.
+- Snake Oil Supplements (http://informationisbeautiful.net/visualizations/snake-oil-scientific-evidence-for-nutritional-supplements-vizsweet/) - Scientific evidence for popular health 
+supplements.
 - SieveSifter (http://sieve.fredhutch.org/viz/index.html?study=VTN503&protein=gag&reference=MRK_B_Ad5) - Tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials.