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Updating conversion, creating readmes

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Jonas Zeunert
2024-04-19 23:37:46 +02:00
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 Awesome Research Tools
 Awesome Research Tools
!Awesome (https://cdn.rawgit.com/sindresorhus/awesome/d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg) (https://github.com/sindresorhus/awesome)
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Version Control System
▐ First things first, everyone should know version control system, aka VCS. VCS helps us track changes in our documents as well as collaborations on the documents. Needless to say, version control is one of the 
▐ most useful tools for scientists.
▐ First things first, everyone should know version control system, aka VCS. VCS helps us track changes in our documents as well as collaborations on the documents. Needless to say, version control is one of the most useful tools for 
▐ scientists.
⟡ git
⟡ svn
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▐ The GTD (Getting Things Done) method unloads the todo lists off the mind by recording them using external tools. It allows one to focus on one active task instead of on all of them (Wikipedia 
▐ (https://en.wikipedia.org/wiki/Getting_Things_Done)).
▐ Tasks can be classified in contexts (@home, @computer, @office, etc), time of action (now, next actions, scheduled or someday) and projects. Here (https://hamberg.no/gtd/) we have a good pragmatic guide to GTD
▐ and here (https://gettingthingsdone.com/pdfs/tt_workflow_chart.pdf) is a flowchart.
▐ Tasks can be classified in contexts (@home, @computer, @office, etc), time of action (now, next actions, scheduled or someday) and projects. Here (https://hamberg.no/gtd/) we have a good pragmatic guide to GTD and here 
▐ (https://gettingthingsdone.com/pdfs/tt_workflow_chart.pdf) is a flowchart.
⟡ Microsoft To Do (https://todo.microsoft.com/tasks) (Cloud,Mac,Win,Android,iOS,Win Store,Chrome OS): Almost perfect todo lists with cooperation and sharing.
⟡ Google Keep (https://keep.google.com/)(Cloud,Android,iOS,Chrome OS)
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⟡ Azure Notebooks (https://notebooks.azure.com/): online jupyter notebooks.
⟡ Datalore (https://datalore.io/): online jupyter notebook by JetBrains.
⟡ CoCalc (SageMathCloud) (https://cocalc.com/): LaTeX, R, iPython Notebook, etc.
⟡ SageMaker (https://aws.amazon.com/sagemaker/): AWS service with a lot of tools integrated. Sagemaker comes with the Sagemake Studio which provides jupyter notebook for programmer and other charting and data 
management tools.
⟡ SageMaker (https://aws.amazon.com/sagemaker/): AWS service with a lot of tools integrated. Sagemaker comes with the Sagemake Studio which provides jupyter notebook for programmer and other charting and data management tools.
⟡ WolframAlpha (https://www.wolframalpha.com/): Excellent engine to do mathematical derivation online and search.
⟡ Mathematica Online (https://www.wolfram.com/mathematica/online/): Bring Mathematica to life in the cloud.
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⟡ ReadtheDocs (http://readthedocs.org/): Turn your reStructuredText source to HTML, PDF, and epub, all done online.
⟡ GitHub pages (https://pages.github.com/): Integrated with Jekyll and turns markdown posts automatically. Jekyll is a tool for blogging.
⟡ GitHub (http://github.com): Just put markdown, reStructuredText, PDF or IPython/Jupyter notebook files on GitHub. All these formats can be previewed online. The thing to mention is that the math in IPython 
notebook can be rendered on GitHub.
⟡ GitHub (http://github.com): Just put markdown, reStructuredText, PDF or IPython/Jupyter notebook files on GitHub. All these formats can be previewed online. The thing to mention is that the math in IPython notebook can be rendered on 
GitHub.
⟡ Surge (https://surge.sh/): One command upload your static website to make it live. Surge also integrates GitHub hooks.
⟡ Heroku (https://www.heroku.com/): The one that needs no explanation.
⟡ AWS (https://aws.amazon.com/): Amazon AWS provide student perks.
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Editors
▐ Markdown, LaTeX, and reStructuredText are the three useful languages.
▐ In most cases, a tweakable text editor such as Visual Studio Code, aka vscode (https://code.visualstudio.com) is good enough. In fact vscode comes with a enormous amount of extensions which can be used to 
▐ build your own IDE.
▐ In most cases, a tweakable text editor such as Visual Studio Code, aka vscode (https://code.visualstudio.com) is good enough. In fact vscode comes with a enormous amount of extensions which can be used to build your own IDE.
Markdown
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⟡ Dillinger (http://dillinger.io/)(Cloud): Markdown editor but no math mode.
⟡ Pandoc Markdown (http://pandoc.herokuapp.com/)(Cloud): Just another Markdown editor with math (MathJax) support.
⟡ Marxico (http://marxi.co/)(Cloud,Mac,Win,Chrome): Markdown editor that integrates with Evernote, generates pdf and works offline. 马克飞象 (https://maxiang.io/)(Cloud,Mac,Win,Chrome) is the Chinese version。
⟡ Madoko (https://www.madoko.net/)(Cloud,Chrome): A Markdown editor with math support, where images are inserted easily with one click, while your files are saved on Dropbox, GitHub, OneDrive or local disk. It 
generates pdf and HTML page and works offline using browser's local storage. One can even import LaTeX files.
⟡ Madoko (https://www.madoko.net/)(Cloud,Chrome): A Markdown editor with math support, where images are inserted easily with one click, while your files are saved on Dropbox, GitHub, OneDrive or local disk. It generates pdf and HTML 
page and works offline using browser's local storage. One can even import LaTeX files.
⟡ Markx (http://markx.herokuapp.com/)(Cloud): Markdown editor for scientific writing. Batteries included.
⟡ typora (https://www.typora.io/)(Mac,Win): Beautiful UI and in-situ live preview.
⟡ Haroopad (http://pad.haroopress.com/)(Mac,Win,Linux): A powerful github flavored markdown editor with useful extensions. Math (mathjax) is supported.
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Investigate Papers
⟡ Synthical (https://synthical.com): AI-powered collaborative research environment. You can use it to get recommendations of articles based on reading history, simplify papers, find out what articles are 
trending, search articles by meaning (not just keywords), create and share folders of articles, see lists of articles from specific companies and universities, and add highlights.
⟡ Synthical (https://synthical.com): AI-powered collaborative research environment. You can use it to get recommendations of articles based on reading history, simplify papers, find out what articles are trending, search articles by 
meaning (not just keywords), create and share folders of articles, see lists of articles from specific companies and universities, and add highlights.
⟡ Paperscape (http://paperscape.org/): Finding interesting papers.
⟡ Peerus (https://peer.us/): Monitor specific topics or journal for new and relevant papers.
⟡ SciRate (https://scirate.com/): An front-end for arXiv with rates from readers.
⟡ ArXiv Sanity Preserver (http://arxiv-sanity.com/): Accelerate research through arXiv specific for many things machine learning by Andrej Karpathy.
⟡ Iris.ai (https://the.iris.ai/): Explore scientific papers and how they connect to a paper of your choice.
⟡ Publish or Perish
 (https://harzing.com/resources/publish-or-perish): Retrieves and analyzes academic citations designed to empower individual academics to present their case for research impact to its best advantage.
⟡ Publish or Perish (https://harzing.com/resources/publish-or-perish): Retrieves and analyzes academic citations designed to empower individual academics to present their case for research impact to its best advantage.
⟡ PubChase (http://pubchase.com/): Life sciences and medical literature recommendation engine.
⟡ Connected Papers (https://www.connectedpapers.com/): Visualise connected papers with support for node colours, size and distance from origin to distinguish whether a paper is useful and how related it is.
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Tips for Researchers
⟡ Ten Simple Rules by PLoS One (http://collections.plos.org/ten-simple-rules): Series of quick "Ten Simple Rules" articles for research scientists to manage challenges in their careers. Number of articles are 
life-science specific, but rest the of articles are general enough for any researcher.
⟡ Check the Academic Resources and Grey Literature List (https://github.com/jivoi/awesome-osint#-academic-resources-and-grey-literature) of the Awesome Open-Source Intelligence List 
(https://github.com/jivoi/awesome-osint) for search engines to search for papers.
⟡ Ten Simple Rules by PLoS One (http://collections.plos.org/ten-simple-rules): Series of quick "Ten Simple Rules" articles for research scientists to manage challenges in their careers. Number of articles are life-science specific, but 
rest the of articles are general enough for any researcher.
⟡ Check the Academic Resources and Grey Literature List (https://github.com/jivoi/awesome-osint#-academic-resources-and-grey-literature) of the Awesome Open-Source Intelligence List (https://github.com/jivoi/awesome-osint) for search 
engines to search for papers.
Pacifier
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⟡ Coffitivity (http://coffitivity.com/)(iOS, Android, Web, Mac): a rather simple but useful coffee shop noise library; premium has more three more soundtracks; elegant UI; scientific research powered
⟡ Brain.fm (https://www.brain.fm/)(Web): Improve Focus, Relaxation & Sleep with audio brainwave training. Not free but worth every penny.
⟡ Noizio (http://noiz.io/)(iOS, Mac): a handy white noise tool that stays in your Mac status bar.
⟡ Noisli (http://www.noisli.com/) (iOS, Android, Web, Chrome): free mixing of multiple tracks (which is similar to Soundrown but with much better UI). Users can save a customized setting for later use. I 
personally think this one has better fire sound tracks than soundrown.
⟡ Noisli (http://www.noisli.com/) (iOS, Android, Web, Chrome): free mixing of multiple tracks (which is similar to Soundrown but with much better UI). Users can save a customized setting for later use. I personally think this one has 
better fire sound tracks than soundrown.
⟡ Soundrown (http://soundrown.com/)(Web): free mixing of multiple tracks
⟡ Muji Sleep (http://sleep.muji.net/)(iOS, Android)
⟡ A Soft Murmur (http://asoftmurmur.com/)(Web): free mixing of multiple tracks; simple UI; Timer provided; Meander available
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⟡ MapInSeconds.com (http://www.mapinseconds.com/): Create maps with corresponding data quickly by copy-pasting from a spreadsheet.
⟡ Unpay Wall (http://unpaywall.org/): legally download research papers for free.
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