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Jonas Zeunert
2024-04-19 23:37:46 +02:00
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 Awesome HPC !Awesome (https://awesome.re/badge-flat.svg) (https://awesome.re)
 Awesome HPC !Awesome (https://awesome.re/badge-flat.svg) (https://awesome.re)
High Performance Computing tools and resources for engineers and administrators.
High Performance Computing (HPC) (https://en.wikipedia.org/wiki/Supercomputer) most generally refers to the practice of aggregating computing power in a way that delivers much higher performance than one could 
get out of a typical desktop computer or workstation in order to solve large problems in science, engineering, or business.
High Performance Computing (HPC) (https://en.wikipedia.org/wiki/Supercomputer) most generally refers to the practice of aggregating computing power in a way that delivers much higher performance than one could get out of a typical 
desktop computer or workstation in order to solve large problems in science, engineering, or business.
Contents
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Provisioning
- Grendel (https://grendel.readthedocs.io/) - Bare Metal Provisioning system for HPC Linux clusters (Source Code (https://github.comubccr/grendel)) GPL-3.
- XCat (https://xcat.org/) - xCAT is a toolkit for deployment and administration of clusters of all sizes (Source Code (https://github.com/xcat2/xcat-core)) EPL-1.0.
- Warewulf (https://warewulf.hpcng.org/) - Warewulf is a stateless and diskless container operating system provisioning system for large clusters of bare metal and/or virtual systems (Source Code 
(https://github.com/hpcng/warewulf)) BSD-3.
- Warewulf (https://warewulf.hpcng.org/) - Warewulf is a stateless and diskless container operating system provisioning system for large clusters of bare metal and/or virtual systems (Source Code (https://github.com/hpcng/warewulf)) 
BSD-3.
- Rocks (http://www.rocksclusters.org/) - A Linux distribution for developing Linux clusters other.
- Cobbler (https://cobbler.github.io/) - Cobbler is a Linux installation server that allows for rapid setup of network installation environments (Source Code (https://github.com/cobbler/cobbler)) GPL-2.0.
- Base Command Manager (https://docs.nvidia.com/base-command-manager/index.html) - Base Command Manager allows administrator to quickly build and manage heterogeneous clusters Proprietary.
- Scyld (https://www.penguinsolutions.com/computing/products/software/scyld-clusterware/) - Scyld Clusterware Scyld ClusterWare is developed based on the continuing evolution of Beowulf clusters first developed 
at NASA in the 1990s Proprietary.
- Scyld (https://www.penguinsolutions.com/computing/products/software/scyld-clusterware/) - Scyld Clusterware Scyld ClusterWare is developed based on the continuing evolution of Beowulf clusters first developed at NASA in the 1990s 
Proprietary.
- BlueBanquise (https://bluebanquise.com) - BlueBanquise is an open source cluster deployment and management stack built on Python and Ansible (Source Code (https://github.com/bluebanquise/bluebanquise)) MIT.
Workload Managers
@@ -59,14 +59,12 @@
- Volcano (https://volcano.sh/) - Volcano is a batch system built on Kubernetes Apache-2.0.
- Maui (https://www.mhpcc.hpc.mil/) - Maui is a workload management and job scheduler other.
- Kube Batch (https://github.com/kubernetes-sigs/kube-batch) - A batch scheduler of kubernetes for high performance workload, e.g. AI/ML, BigData, HPC Apache-2.0.
- OpenPBS (https://www.openpbs.org/) - OpenPBS® software optimizes job scheduling and workload management in high-performance computing (HPC) environments (Source Code (https://github.com/openpbs/openpbs)) other
.
- OpenPBS (https://www.openpbs.org/) - OpenPBS® software optimizes job scheduling and workload management in high-performance computing (HPC) environments (Source Code (https://github.com/openpbs/openpbs)) other.
Pipelines
- Nextflow (https://nextflow.io) - Data drive computational pipelines Apache-2.0.
- Cromwell (https://cromwell.readthedocs.io/en/stable/) - Scientific workflow engine designed for simplicity & scalability (Source Code (https://github.com/broadinstitute/cromwell)) BSD-3.
- Pegasus (https://pegasus.isi.edu/) - A configurable system for mapping and executing scientific workflows over a wide range of computational infrastructure (Source Code 
(https://github.com/pegasus-isi/pegasus))Apache-2.0.
- Pegasus (https://pegasus.isi.edu/) - A configurable system for mapping and executing scientific workflows over a wide range of computational infrastructure (Source Code (https://github.com/pegasus-isi/pegasus))Apache-2.0.
Applications
- Spack (https://spack.io) - A flexible package manager that supports multiple versions, configurations, platforms, and compilers (Source Code (https://github.com/spack/spack)) other.
@@ -106,19 +104,16 @@
- OpenOnDemand (https://openondemand.org/) - Open OnDemand helps computational researchers and students efficiently utilize remote computing resources by making them easy to access from any device (Source Code 
(https://github.com/OSC/openondemand.org)) MIT.
- Open XDMod (https://open.xdmod.org) - Open XDMoD is an open source tool to facilitate the management of high performance computing resources (Source Code (https://github.com/ubccr/xdmod/)) LGPL-3.
- Coldfront (https://coldfront.readthedocs.io/en/latest/) - ColdFront is an open source resource allocation system designed to provide a central portal for administration, reporting, and measuring scientific 
impact of HPC resources (Source Code (https://github.com/ubccr/coldfront)) GPL-3.
- Coldfront (https://coldfront.readthedocs.io/en/latest/) - ColdFront is an open source resource allocation system designed to provide a central portal for administration, reporting, and measuring scientific impact of HPC resources (
Source Code (https://github.com/ubccr/coldfront)) GPL-3.
- Pavilion2 (https://pavilion2.readthedocs.io/) - Pavilion is a Python 3 (3.6+) based framework for running and analyzing tests targeting HPC systems (Source Code (https://github.com/hpc/pavilion2)) other.
- Reframe (https://reframe-hpc.readthedocs.io/en/stable/) - A powerful Python framework for writing and running portable regression tests and benchmarks for HPC systems. (Source Code 
(https://github.com/reframe-hpc/reframe)) BSD-3.
- OLCF Test Harness (https://olcf.github.io/olcf-test-harness/) - The OLCF Test Harness (OTH) helps automate the testing of applications, tools, and other system software (Source Code 
(https://github.com/olcf/olcf-test-harness)) other. 
- Reframe (https://reframe-hpc.readthedocs.io/en/stable/) - A powerful Python framework for writing and running portable regression tests and benchmarks for HPC systems. (Source Code (https://github.com/reframe-hpc/reframe)) BSD-3.
- OLCF Test Harness (https://olcf.github.io/olcf-test-harness/) - The OLCF Test Harness (OTH) helps automate the testing of applications, tools, and other system software (Source Code (https://github.com/olcf/olcf-test-harness)) other. 
- GoSlmailer (https://github.com/CLIP-HPC/goslmailer) - Goslmailer is a drop-in notification delivery solution for slurm that can do slack, mattermost, teams, and more.
Performance
- TotalView (https://totalview.io/products/totalview) - TotalView is a debugging tool for HPC applications Proprietary.
- Tau (https://www.cs.uoregon.edu/research/tau/home.php) - TAU Performance System® is a portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java,
Python other.
- Tau (https://www.cs.uoregon.edu/research/tau/home.php) - TAU Performance System® is a portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python other.
- Valgrind (https://www.valgrind.org/) - Valgrind is a tool designed to profile programs to determine memory leaks (Source Code (https://sourceware.org/git/?p=valgrind.git)) GPL-2.
- Paraver (https://tools.bsc.es/paraver) - Paraver is a very flexible data browser that is part of the CEPBA-Tools toolkit other.
- PAPI (http://icl.cs.utk.edu/papi) - Performance Application Programming Interface (PAPI) is a performance analysis tool (Source Code (https://bitbucket.org/icl/papi/src/master/)) other.
@@ -129,11 +124,9 @@
Containers
- Apptainer (https://apptainer.org) - Apptainer is an open source container system (Source Code (https://github.com/apptainer/apptainer)) BSD.
- Charliecloud (https://hpc.github.io/charliecloud/) - Charliecloud provides user-defined software stacks (UDSS) for high-performance computing (HPC) centers (Source Code (https://github.com/hpc/charliecloud)) 
Apache-2.0.
- Charliecloud (https://hpc.github.io/charliecloud/) - Charliecloud provides user-defined software stacks (UDSS) for high-performance computing (HPC) centers (Source Code (https://github.com/hpc/charliecloud)) Apache-2.0.
- Docker (https://www.docker.com/) - Docker is a set of platform as a service products that use OS-level virtualization to deliver software in packages called containers other.
- uDocker (https://indigo-dc.github.io/udocker/) - A basic user tool to execute simple docker containers in batch or interactive systems without root privileges (Source Code 
(https://github.com/indigo-dc/udocker)) Apache-2.0.
- uDocker (https://indigo-dc.github.io/udocker/) - A basic user tool to execute simple docker containers in batch or interactive systems without root privileges (Source Code (https://github.com/indigo-dc/udocker)) Apache-2.0.
- Shifter (https://www.nersc.gov/research-and-development/user-defined-images/) - Shifter is Linux containers for HPC (Source Code (https://github.com/NERSC/shifter)) other.
- HPC Container Maker (https://github.com/NVIDIA/hpc-container-maker) - HPC Container Maker is an open source tool to make it easier to generate container specification files. Apache-2.0.
- Scarus (https://github.com/eth-cscs/sarus) - An OCI-compatible container engine for HPC BSD.
@@ -147,8 +140,7 @@
Visualization
- Visit (https://visit-dav.github.io/visit-website/) - VisIt - Visualization and Data Analysis for Mesh-based Scientific Data (Source Code (https://github.com/visit-dav/visit)) BSD-3.
- Paraview (https://www.paraview.org/) - ParaView is an open-source, multi-platform data analysis and visualization application based on Visualization Toolkit (VTK) (Source Code 
(https://github.com/Kitware/ParaView)) BSD-3.
- Paraview (https://www.paraview.org/) - ParaView is an open-source, multi-platform data analysis and visualization application based on Visualization Toolkit (VTK) (Source Code (https://github.com/Kitware/ParaView)) BSD-3.
Parallel Filesystems
- GPFS (https://www.ibm.com/docs/en/gpfs/4.1.0.4?topic=guide-introducing-general-parallel-file-system) - GPFS is a high-performance clustered file system software developed by IBM Proprietary.
@@ -157,8 +149,7 @@
- Weka (https://www.weka.io/) - A file system designed for HPC Proprietary .
- Lustre/Exascaler (https://www.lustre.org/) - Lustre is an open-source, distributed parallel file system software platform designed for scalability, high-performance, and high-availability (Source Code 
(https://git.whamcloud.com/fs/lustre-release.git)) other.
- BeeGFS (https://www.beegfs.io/c/) - BeeGFS is a hardware-independent POSIX parallel file system developed with a strong focus on performance and designed for ease of use, simple installation, and management 
Proprietary.
- BeeGFS (https://www.beegfs.io/c/) - BeeGFS is a hardware-independent POSIX parallel file system developed with a strong focus on performance and designed for ease of use, simple installation, and management Proprietary.
- OrangeFS (http://www.orangefs.org/) - OrangeFS is a next generation parallel file system for Linux clusters (Source Code (https://github.com/waltligon/orangefs)) other.
- MooseFS (https://moosefs.com/) - Moose File System is an Open-source, POSIX-compliant distributed file system developed by Core Technology (Source Code (https://github.com/moosefs/moosefs)) GPL-2.0.
@@ -183,8 +174,8 @@
Podcasts
- This week in HPC (https://www.intersect360.com/media/podcasts/) - Each week, Intersect360 Research CEO Addison Snell and HPCwire editor Tiffany Trader dissect the week's top HPC stories. 
- Exascaler Project (https://www.exascaleproject.org/podcast/) - ECP's Let's Talk Exascale podcast goes behind the scenes to chat with some of the people who are bringing a capable and sustainable exascale 
computing ecosystem to fruition.
- Exascaler Project (https://www.exascaleproject.org/podcast/) - ECP's Let's Talk Exascale podcast goes behind the scenes to chat with some of the people who are bringing a capable and sustainable exascale computing ecosystem to 
fruition.
- @HPCpodcast (https://insidehpc.com/category/resources/hpc-podcast/) - Join Shahin Khan and Doug Black as they discuss Supercomputing technologies and the applications, markets, and policies that shape them.
@@ -207,8 +198,8 @@
- ESSA (https://sites.google.com/view/essa-2024/) - Workshop on Extreme-Scale Storage and Analysis.
- IEEE-IPDPS (https://www.ipdps.org/) - IEEE International Parallel & Distributed Processing Symposium.
- ESPM2 Workshop (http://nowlab.cse.ohio-state.edu/espm2/) - International Workshop on Extreme Scale Programming Models and Middleware.
- LCI Workshops (https://linuxclustersinstitute.org/workshops/) - The Linux Clusters Institute (LCI) is providing education and advanced technical training for the deployment and use of computing clusters to the
high performance computing community worldwide.
- LCI Workshops (https://linuxclustersinstitute.org/workshops/) - The Linux Clusters Institute (LCI) is providing education and advanced technical training for the deployment and use of computing clusters to the high performance 
computing community worldwide.
- HPC Carpentry (https://www.hpc-carpentry.org/) - Teaching basic skills for high-performance computing.
Websites
@@ -216,8 +207,8 @@
- Top500 (https://top500.org) - The TOP500 project ranks and details the 500 most powerful non-distributed computer systems in the world.
User Groups
- MVAPICH (https://mug.mvapich.cse.ohio-state.edu/) - The MUG conference provides an open forum for all attendees (users, system administrators, researchers, engineers, and students) to discuss and share their 
knowledge on using MVAPICH libraries.
- MVAPICH (https://mug.mvapich.cse.ohio-state.edu/) - The MUG conference provides an open forum for all attendees (users, system administrators, researchers, engineers, and students) to discuss and share their knowledge on using MVAPICH
libraries.
- Slurm (https://slurm.schedmd.com/slurm_ug_agenda.html) - The annual Slurm user group meeting.
Contributing